deeptools

Quick Review

Exceptional genomics skill with comprehensive coverage of deepTools NGS analysis. The description clearly conveys BAM-to-bigWig conversion, QC, and visualization capabilities. Task knowledge is outstanding with detailed workflows, helper scripts for validation and workflow generation, and extensive reference documentation covering tools, normalization methods, and genome sizes. Structure is excellent with a clean SKILL.md overview that efficiently indexes detailed references and scripts. The skill provides substantial value over raw CLI usage by encoding complex domain knowledge (normalization selection, parameter choices, workflow patterns), reducing token costs for multi-step genomics analyses. Minor point: while structure is very good, the main SKILL.md is quite detailed (could be slightly more concise), though this is balanced by having separate reference files.