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ena-database

8.1

by davila7

88Favorites
389Upvotes
0Downvotes

Access European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by accession, for genomics and bioinformatics pipelines. Supports multiple formats.

bioinformatics

8.1

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0

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Data & Analytics

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Quick Review

Excellent bioinformatics skill for ENA database access. The description clearly articulates capabilities (sequence retrieval, FASTQ downloads, assembly access) sufficient for CLI invocation. Task knowledge is strong with concrete API patterns, Python examples, and detailed workflows for common genomics tasks. Structure is clean with overview, capabilities, use cases, and offloaded API details to references/. Novelty is solid: while basic HTTP requests are simple, the domain-specific knowledge (hierarchical data types, rate limiting, format conversions, FTP/Aspera protocols, BLAST integration) and bioinformatics context would require significant token expenditure for a CLI agent to discover independently. Minor improvement possible in providing more complete end-to-end pipeline examples.

LLM Signals

Description coverage9
Task knowledge8
Structure9
Novelty7

GitHub Signals

18,073
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Last commit 0 days ago

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davila7

davila7

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