etetoolkit

Quick Review

Excellent phylogenetic analysis skill with comprehensive coverage of ETE toolkit capabilities. The description clearly outlines tree manipulation, evolutionary analysis, NCBI taxonomy integration, and visualization functions. Task knowledge is outstanding with detailed code examples, CLI scripts, and workflows for common phylogenomic pipelines. Structure is well-organized with a clear overview, six core capability sections, and references to separate documentation files for API details, workflows, and visualization guides. The skill provides significant value for phylogenetic research by consolidating complex tree operations, orthology detection, and publication-quality visualization that would otherwise require extensive token usage and multiple tool invocations. Minor improvements could include more explicit examples of reconciliation algorithms and clustering validation metrics, but overall this is a high-quality, production-ready skill for bioinformatics research.