Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, stain normalization for H&E images. Best for simple pipelines, dataset preparation, quick tile-based analysis. For advanced spatial proteomics, multiplexed imaging, or deep learning pipelines use pathml.
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Exceptional skill for whole slide image processing with outstanding documentation. The SKILL.md provides clear overview with well-organized sections covering slide management, tissue detection, tile extraction strategies, filters, and visualization. The structure is exemplary: concise main document with comprehensive details delegated to five focused reference files. Task knowledge is exhaustive with complete code examples, three tiler strategies (Random/Grid/Score), multiple workflow patterns, and practical troubleshooting. Description clearly positions the skill for basic H&E pipelines vs advanced spatial proteomics. Novelty is strong—automating gigapixel WSI tile extraction with sophisticated tissue segmentation and scoring would consume many tokens if done iteratively via CLI. Minor limitation: while powerful for pathology pipelines, the domain is somewhat specialized compared to broadly applicable skills.
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