hmdb-database

Quick Review

This skill provides comprehensive guidance for accessing and utilizing the HMDB metabolomics database. The description clearly covers the skill's capabilities including search methods, data retrieval, bulk downloads, and research workflows. Task knowledge is excellent with detailed steps for metabolite identification, biomarker discovery, and pathway analysis. The structure is logical and well-organized with clear sections and a helpful reference file. However, novelty is moderate—while HMDB is a specialized resource, most tasks involve straightforward web searches or file downloads that a CLI agent could accomplish with basic instructions. The skill adds value primarily through consolidated domain knowledge and workflow guidance rather than solving computationally complex problems. The lack of a public API limits programmatic automation opportunities. Overall, this is a solid reference skill for bioinformatics researchers working with metabolomics data.