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pathml

8.6

by davila7

180Favorites
353Upvotes
0Downvotes

Computational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data. Use this skill when working with histopathology slides, H&E stained images, multiplex immunofluorescence (CODEX, Vectra), spatial proteomics, nucleus detection/segmentation, tissue graph construction, or training ML models on pathology data. Supports 160+ slide formats including Aperio SVS, NDPI, DICOM, OME-TIFF for digital pathology workflows.

computational-pathology

8.6

Rating

0

Installs

Machine Learning

Category

Quick Review

Exceptional computational pathology skill with comprehensive coverage of whole-slide imaging workflows. The description clearly articulates when to use the skill (histopathology slides, H&E staining, multiplex immunofluorescence, spatial proteomics) with specific technologies and formats mentioned. The structure is exemplary: SKILL.md provides a concise overview with six well-organized capability areas, each delegating detailed documentation to appropriate reference files, avoiding clutter while maintaining completeness. Task knowledge is outstanding with concrete code examples, three common workflow templates, and systematic references to detailed documentation. The skill addresses a genuinely complex domain where manual CLI work would be extremely token-intensive due to diverse file formats (160+), specialized preprocessing pipelines, graph construction, and integration of multiple ML models. Minor limitation: while highly specialized and valuable for computational pathology, the novelty score reflects that some components (image loading, preprocessing) follow established patterns, though the domain integration and multiparametric capabilities are distinctive. Overall, this is a well-crafted skill that would significantly reduce token costs for pathology analysis tasks.

LLM Signals

Description coverage9
Task knowledge10
Structure10
Novelty8

GitHub Signals

18,069
1,635
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71
Last commit 0 days ago

Publisher

davila7

davila7

Skill Author

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davila7

Skill Author

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