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pdb-database

8.1

by davila7

77Favorites
379Upvotes
0Downvotes

Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.

bioinformatics

8.1

Rating

0

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Data & Analytics

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Quick Review

Excellent skill for accessing RCSB PDB structural biology data. The description clearly covers all core capabilities (search, retrieval, download, batch operations) with concrete Python examples that would enable a CLI agent to invoke them. Task knowledge is comprehensive with working code for text/sequence/structure searches, data fetching, and file downloads. Structure is logical with clear sections and appropriate delegation to references/ for API details. Novelty is solid - while the underlying API is accessible, this skill packages complex bioinformatics operations (sequence similarity, GraphQL queries, metadata extraction) that would require significant tokens and domain expertise for an agent to construct independently. Minor improvement areas: could add more error handling patterns and perhaps a quick-reference command summary table, but overall this is a well-crafted, immediately usable skill for structural biology workflows.

LLM Signals

Description coverage9
Task knowledge9
Structure8
Novelty7

GitHub Signals

18,073
1,635
132
71
Last commit 0 days ago

Publisher

davila7

davila7

Skill Author

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davila7

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