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pdb-database

8.3

by K-Dense-AI

195Favorites
391Upvotes
0Downvotes

Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.

bioinformatics

8.3

Rating

0

Installs

Data & Analytics

Category

Quick Review

Excellent bioinformatics skill providing comprehensive access to RCSB PDB structural data. The description clearly conveys capabilities (search, download, metadata retrieval) sufficient for CLI invocation. Task knowledge is outstanding with extensive code examples covering text/sequence/structure searches, file downloads, data retrieval, and batch operations. Structure is well-organized with clear sections, though SKILL.md is somewhat lengthy - more content could potentially be moved to references. Novelty is strong: while basic PDB queries are straightforward, this skill packages complex search operators, GraphQL queries, sequence/structure similarity searches, and batch operations that would consume significant tokens if done via general CLI. The unified interface to multiple PDB APIs and pre-configured query patterns provide meaningful cost reduction for structural biology workflows. Minor deduction on structure due to length, but overall this is a high-quality, production-ready skill.

LLM Signals

Description coverage9
Task knowledge10
Structure9
Novelty8

GitHub Signals

6,871
818
49
3
Last commit 1 days ago

Publisher

K-Dense-AI

K-Dense-AI

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